EntrezGene ID Gid HGNC Symbol Ensembl Gene ID Transcript Illumina Fold Change Gene ID Gene Name Affymetrix Fold Affymetrix ID NimbleGen 5297 GI_89071779 PIK4CA ENSG00000133511 XM_942088.1 2.385355077 ILMN_1656184 LOC728233 -4.298856504 207081_s_at CHR22:19539791-19546570 1660 GI_88943629 DHX9 ENSG00000135829 XM_934286.1 2.089339067 ILMN_1676285 DHX9 -4.755790175 212105_s_at CHR1:181113542-181117792 10384 GI_37574626 BTN3A3 ENSG00000111801 NM_006994.3 1.847770222 ILMN_1733338 BTN3A3 1.96789 204820_s_at CHR6:26545241-26549491 1017 GI_16936527 CDK2 ENSG00000123374 NM_001798.2 1.68906436 ILMN_1653443 CDK2 -2.248049817 211804_s_at CHR12:54643325-54649593 4598 GI_4557768 MVK ENSG00000110921 NM_000431.1 1.641951915 ILMN_1786310 MVK -2.837281884 204056_s_at CHR12:108492499-108499185 102 GI_73747882 ADAM10 ENSG00000137845 NM_001110.2 1.554237642 ILMN_1718946 ADAM10 2.81306 202603_at CHR15:56828719-56832969 6259 GI_88971122 RYK ENSG00000163785 XM_940269.1 1.537900583 ILMN_1658526 RYK 2.41734 202853_s_at CHR3:135451526-135455780 3669 GI_34147571 ISG20 ENSG00000172183 NM_002201.4 -1.723140043 ILMN_1659913 ISG20 2.16986 33304_at CHR15:86979542-86984030 130355 GI_62988352 LOC130355 ENSG00000186132 NM_001017927.1 -2.364049316 ILMN_1726729 DBI -1.934610176 209389_x_at CHR2:119837542-119844374 546 GI_89062813 ATRX ENSG00000085224 XM_941907.1 2.852588796 ILMN_1718353 LOC652458 2.28599 208859_s_at 9289 GI_41584197 GPR56 ENSG00000205336 NM_201525.1 2.221846222 ILMN_1756931 GPR56 -2.804655729 206582_s_at 2896 GI_60498993 GRN ENSG00000030582 NM_002087.2 2.152753851 ILMN_1724250 GRN -2.361107832 211284_s_at 11282 GI_16915933 MGAT4B ENSG00000161013 NM_014275.2 2.097970835 ILMN_1722438 MGAT4B -3.81155664 220189_s_at 6666 GI_21264338 SOX12 ENSG00000177732 NM_006943.2 1.966509067 ILMN_1736974 SOX12 -2.684347569 204432_at 3570 GI_31317250 IL6R ENSG00000160712 NM_000565.2 1.963446749 ILMN_1696394 IL6R 2.41974 205945_at 5641 GI_56682961 LGMN ENSG00000100600 NM_005606.5 1.955908506 ILMN_1698019 LGMN 1.68063 201212_at 374868 GI_41327759 ATP9B ENSG00000166377 NM_198531.3 1.853368691 ILMN_1658684 ATP9B -1.915672114 214934_at 7982 GI_54112123 ST7 ENSG00000004866 NM_018412.3 1.812755327 ILMN_1707763 ST7 -2.480466328 207524_at 6781 GI_61676083 STC1 ENSG00000159167 NM_003155.2 1.784383261 ILMN_1758164 STC1 -3.475722081 230746_s_at 23318 GI_57863247 ZCCHC11 ENSG00000134744 NM_001009881.1 1.783736606 ILMN_1655137 ZCCHC11 1.56924 212704_at 55706 GI_37059744 TMEM48 ENSG00000058804 NM_018087.3 1.776164159 ILMN_1749930 TMEM48 -2.623914355 218073_s_at 8450 GI_28372492 CUL4B ENSG00000158290 NM_003588.2 1.759469402 ILMN_1691535 CUL4B -2.814126917 210257_x_at 26298 GI_47132617 EHF ENSG00000135373 NM_012153.3 1.753366855 ILMN_1708130 EHF -3.401244856 219850_s_at 54800 GI_62865888 KLHL24 ENSG00000114796 NM_017644.3 1.713481894 ILMN_1685297 KLHL24 1.99409 221985_at 6687 GI_40806172 SPG7 ENSG00000197912 NM_199367.1 1.700401476 ILMN_1675583 SPG7 -1.533907015 214494_s_at 6650 GI_41406087 SOLH ENSG00000103326 NM_005632.2 1.699274447 ILMN_1763739 SOLH -3.567224343 204275_at 6184 GI_62739176 RPN1 ENSG00000163902 NM_002950.3 1.697124923 ILMN_1660533 RPN1 -1.610928539 201011_at 9361 GI_21396488 LONP1 ENSG00000196365 NM_004793.2 1.660874425 ILMN_1766125 LONP1 -3.747844989 209017_s_at 493 GI_48255956 ATP2B4 ENSG00000058668 NM_001684.3 1.640805704 ILMN_1680579 ATP2B4 3.31093 212136_at 2622 GI_4503916 GAS8 ENSG00000141013 NM_001481.1 1.637150391 ILMN_1783798 GAS8 -2.010777769 204921_at 3710 GI_4504794 ITPR3 ENSG00000096433 NM_002224.1 1.635712448 ILMN_1815500 ITPR3 -2.817139477 201188_s_at 4041 GI_4505018 LRP5 ENSG00000162337 NM_002335.1 1.626045854 ILMN_1767558 LRP5 -2.016007096 209468_at 2530 GI_30410723 FUT8 ENSG00000033170 NM_178154.1 1.616025845 ILMN_1741422 FUT8 2.89447 203988_s_at 538 GI_53986562 ATP7A ENSG00000165240 NM_000052.2 1.606152933 ILMN_1808115 ATP7A 2.12951 205197_s_at 9522 GI_33598918 SCAMP1 ENSG00000085365 NM_052822.2 1.59747065 ILMN_1728907 SCAMP1 -2.478499021 206667_s_at 1374 GI_73623029 CPT1A ENSG00000110090 NM_001876.2 1.591955342 ILMN_1696316 CPT1A -1.812513594 203633_at 23367 GI_61102724 LARP1 ENSG00000155506 NM_033551.2 1.577473645 ILMN_1692770 LARP1 -2.373098555 210966_x_at 5211 GI_50346003 PFKL ENSG00000141959 NM_002626.4 1.548344965 ILMN_1713037 PFKL -2.361219334 211065_x_at 9197 GI_6042194 SLC33A1 ENSG00000169359 NM_004733.2 1.535646953 ILMN_1702683 SLC33A1 2.27921 203165_s_at 9270 GI_20143949 ITGB1BP1 ENSG00000119185 NM_022334.2 1.533786004 ILMN_1665107 ITGB1BP1 -2.944033915 203336_s_at 10972 GI_40255040 TMED10 ENSG00000170348 NM_006827.4 1.512725852 ILMN_1736585 TMED10 1.66843 212352_s_at 283232 GI_89034445 TMEM80 ENSG00000177042 XM_938671.1 1.511539514 ILMN_1708482 TMEM80 -3.147029204 65630_at 55743 GI_8922674 CHFR ENSG00000072609 NM_018223.1 1.505505649 ILMN_1653828 CHFR -2.700877785 223931_s_at 79033 GI_88947694 PRNPIP ENSG00000117419 XM_945812.1 -1.510237913 ILMN_1737813 PRNPIP -2.658443216 208973_at 4831 GI_66392202 NME1 ENSG00000011052 NM_001018136.1 -1.54190726 ILMN_1693430 NME1-NME2 -2.193367257 201268_at 204 GI_26665889 AK2 ENSG00000004455 NM_001625.2 -1.543017628 ILMN_1670542 AK2 -1.928119698 208967_s_at 8034 GI_31652216 SLC25A16 ENSG00000122912 NM_152707.2 -1.574487526 ILMN_1806032 SLC25A16 -2.63047138 210686_x_at 27109 GI_51558767 ATP5S ENSG00000125375 NM_015684.2 -1.616287845 ILMN_1679188 ATP5S 2.30391 206993_at 4831 GI_66392191 NME2 ENSG00000011052 NM_001018137.1 -1.711604193 ILMN_1694012 NME2 -2.193367257 201268_at 27109 GI_51558773 ATP5S ENSG00000125375 NM_001003803.1 -1.772325826 ILMN_1700625 ATP5S 2.30391 206993_at 1660 GI_13514819 DHX9 ENSG00000135829 NM_001357.2 1.585421667 ILMN_1656016 DHX9 -4.755790175 212105_s_at CHR1:181113542-181117792 11282 GI_16915935 MGAT4B ENSG00000161013 NM_054013.1 1.519840937 ILMN_1796106 MGAT4B -3.81155664 220189_s_at 6687 GI_40806171 SPG7 ENSG00000197912 NM_003119.2 1.537478986 ILMN_1754529 SPG7 -1.533907015 214494_s_at 7982 GI_54112123 ST7 ENSG00000004866 NM_018412.3 1.548212752 ILMN_1702175 ST7 -2.480466328 207524_at